Supplementary Table S2: List of the 58 organisms queried to build the vertebrate manually curated multiple sequence alignments.

Taxonomy ID (NCBI) / in-house defined MiSynPat sequence nomenclature / species name (binomiale nomenclature)

9646 / Ailu.mela / Ailuropoda melanoleuca
8496 / Alli.miss / Alligator mississippiensis
12930 / Amaz.aest / Amazona aestiva
28377 / Anol.caro / Anolis carolinensis
7994 / Asty.mexi / Astyanax mexicanus
9913 / Bos.taur / Bos taurus
9483 / Call.jacc / Callithrix jacchus
419612 / Came.feru / Camelus ferus
9612 / Cani.lupu / Canis lupus
10141 / Cavi.porc / Cavia porcellus
8469 / Chel.myda / Chelonia mydas
60711 / Chlo.saba / Chlorocebus sabaeus
7955 / Dani.reri / Danio rerio
9796 / Equu.caba / Equus caballus
9685 / Feli.catu / Felis catus
59894 / Fice.albi / Ficedula albicollis
885580 / Fuko.dama / Fukomys damarensis
9031 / Gall.gall / Gallus gallus
69293 / Gast.acul / Gasterosteus aculeatus
9593 / Gori.gori / Gorilla gorilla
10181 / Hete.glab / Heterocephalus glaber
9606 / Homo.sapi / Homo sapiens
43179 / Icti.trid / Ictidomys tridecemlineatus
215358 / Lari.croc / Larimichthys crocea
7897 / Lati.chal / Latimeria chalumnae
7918 / Lepi.ocul / Lepisosteus oculatus
9785 / Loxo.afri / Loxodonta africana
9541 / Maca.fasc / Macaca fascicularis
9544 / Maca.mula / Macaca mulatta
13616 / Mono.dome / Monodelphis domestica
10090 / Mus.musc / Mus musculus
9668 / Must.puto / Mustela putorius
109478 / Myot.bran / Myotis brandtii
225400 / Myot.davi / Myotis davidii
59463 / Myot.luci / Myotis lucifugus
61853 / Noma.leuc / Nomascus leucogenys
8665 / Ophi.hann / Ophiophagus hannah
8128 / Oreo.nilo / Oreochromis niloticus
9258 / Orni.anat / Ornithorhynchus anatinus
9986 / Oryc.cuni / Oryctolagus cuniculus
8090 / Oryz.lati / Oryzias latipes
30611 / Otol.garn / Otolemur garnettii
9940 / Ovis.arie / Ovis aries
9598 / Pan.trog / Pan troglodytes
9555 / Papi.anub / Papio anubis
13735 / Pelo.sine / Pelodiscus sinensis
48698 / Poec.form / Poecilia formosa
9601 / Pong.abel / Pongo abelii
9402 / Pter.alec / Pteropus alecto
10116 / Ratt.norv / Rattus norvegicus
9305 / Sarc.harr / Sarcophilus harrisii
113540 / Scle.form / Scleropages formosus
9823 / Sus.scro / Sus scrofa
31033 / Taki.rubr / Takifugu rubripes
99883 / Tetr.nigr / Tetraodon nigroviridis
246437 / Tupa.chin / Tupaia chinensis
8364 / Xeno.trop / Xenopus tropicalis
8083 / Xiph.macu / Xiphophorus maculatus